Welcome to MoldHelper’s documentation!

Contents:

• About MoldHelper
  • Citations
• Download and Install
• Building a Mold using a 7T MRI scan of the MTL
  • About this Protocol
  • Step 1. Download Input MRI Scan
  • Step 2. Segment the MTL from the Background in ITK-SNAP
  • Step 3. Create a Reference Mold
  • Step 4. Position the Specimen in the Mold
  • Step 5. Carve the tissue segmentation out of the mold
  • Step 6. Trim the mold to reduce plastic use
  • Step 7. Process meshes in MeshLab
  • Step 8. Visualize sample placement in mold
• Building a Mold using a 9.4T MRI scan of the MTL
  • Step 1. Download Input MRI Scans
  • Step 2. Segment the specimen on the 9.4T scan
  • Step 3. Rigid/Affine registration of the hemisphere 7T to the MTL 9.4T
  • Step 4. Deformable registration of the hemisphere 7T to the MTL 9.4T
  • Step 5. Generate a Mold

Indices and tables

• Index

• Module Index

• Search Page